Genetic diversity of Lombok chickens based on D-loop mitochondrial DNA sequences

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dc.creatorArifin Zein, M. Syamsul
dc.creatorSulandari, Sri
dc.date2012-02-05
dc.date.accessioned2018-06-04T06:47:48Z
dc.date.available2018-06-04T06:47:48Z
dc.date.issued2012-02-05
dc.descriptionMitochondrial DNA (mtDNA) displacement (D)-loop sequences were used to study the genetic diversity and relationship of Lombok chickens. A total of 45 individuals were sampled. The D-loop segment was PCR amplified and subsequently sequenced. The sequences of the 785 nucleotides were used for analysis. Twelve haplotypes were identified from 25 polymorphic sites with polymorphism between nucleotides 200 and 400 contributing to 80% of the variation. Fu’s Fs value was - 8.768 (all samples, P = 0), indicating high genetic diversity and population expansion, a conclusion supported by a neighbor– joining analysis of the haplotypes. Nucleotides diversity of the Lombok chicken were 0.00221 and haplotype diversity were 0.654 + 0.08. The dominant haplotype found among the Lombok chickens was haplotype B (62%) and genetic distances value ranged from 0.001 to 0.017.     Key Words: Mtdna, D-Loop, Genetic Diversity, Haplotype, Lombok Chickenen-US
dc.formatapplication/pdf
dc.identifierhttp://medpub.litbang.pertanian.go.id/index.php/jitv/article/view/575
dc.identifier10.14334/jitv.v13i4.575
dc.identifier.urihttps://repository.pertanian.go.id/handle/123456789/3049
dc.languageeng
dc.publisherIndonesian Animal Sciences Societyen-US
dc.relationhttp://medpub.litbang.pertanian.go.id/index.php/jitv/article/view/575/584
dc.rightsCopyright (c) 1970 Indonesian Journal of Animal and Veterinary Sciencesen-US
dc.rightshttp://creativecommons.org/licenses/by/4.0en-US
dc.source2252-696X
dc.source0853-7380
dc.sourceIndonesian Journal of Animal and Veterinary Sciences; Vol 13, No 4 (2008): DECEMBER 2008; p.308-314en-US
dc.titleGenetic diversity of Lombok chickens based on D-loop mitochondrial DNA sequencesen-US
dc.typeinfo:eu-repo/semantics/article
dc.typeinfo:eu-repo/semantics/publishedVersion
dc.typePeer-reviewed Articleen-US
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